Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRC rs9791368 chr6:2389242 C/A 2.96E-6 517 40 39.07 15.55 KM Plot
KIRP rs10008352 chr4:37687233 G/A 5.85E-6 284 25.57 31.13 16.45 KM Plot
KIRP rs10023047 chr4:5505585 T/A 2.67E-5 279 25.7 29.2 13.27 KM Plot
KIRP rs10032518 chr4:5508665 A/G 4.14E-5 289 25.58 30.38 7.13 KM Plot
KIRP rs10040975 chr5:156439659 A/G 8.32E-6 285 13.05 22.57 26.4 KM Plot
KIRP rs10048665 chr2:100933085 A/G 2.03E-5 283 26 26 25.57 KM Plot
KIRP rs10066168 chr5:156484218 C/T 2.52E-6 279 12.1 26.48 26.1 KM Plot
KIRP rs10066231 chr5:156484283 C/T 2.22E-6 278 12.1 26.4 26.1 KM Plot
KIRP rs10073683 chr5:156483993 A/G 2.53E-6 280 12.1 26.4 26.1 KM Plot
KIRP rs1007611 chr3:124602723 A/G 0.000165 285 26.07 25.7 16.47 KM Plot
KIRP rs10078070 chr5:167780666 C/T 2.93E-9 289 25.58 27.82 9.77 KM Plot
KIRP rs1007857 chr3:124604689 C/A 1.24E-5 284 25.93 24.67 16.4 KM Plot
KIRP rs1009227 chr1:231480507 A/G 0.00013 283 21.28 25.63 26.18 KM Plot
KIRP rs1010637 chr10:134153965 G/A 0.000124 283 26.37 24.43 5.67 KM Plot
KIRP rs10139745 chr14:95035374 C/T 4.68E-5 289 23.4 28.17 22.57 KM Plot